Publications
Bengtsson, S., Krogh, M., Szigyarto, C. A., Uhlen, M., Schedvins, K., Silfversward, C., Linder, S., Auer, G., Alaiya, A. and James, P. (2007)
Large-scale proteomics analysis of human ovarian cancer for biomarkers J Proteome Res 6(4): 1440-50.
Lerner, M., Corcoran, M., Cepeda, D., Nielsen, M. L., Zubarev, R., Ponten, F., Uhlen, M., Hober, S., Grander, D. and Sangfelt, O. (2007)
The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD Mol Biol Cell 18(5): 1670-82.
Lundberg, E., Sundberg, M., Graslund, T., Uhlen, M. and Svahn, H. A. (2007)
A novel method for reproducible fluorescent labeling of small amounts of antibodies on solid phase J Immunol Methods 322(1-2): 40-9.
Mulder, J., Wernerus, H., Shi, T. J., Ponten, F., Hober, S., Uhlen, M. and Hokfelt, T. (2007)
Systematically generated antibodies against human gene products: high throughput screening on sections from the rat nervous system Neuroscience 146(4): 1689-703.
Orchard, S., Heck, A., Uhlen, M. and Ping, P. (2007)
Publication Committee meeting. HUPO 5th annual World Congress. Long Beach, CA, USA 30 October 2006 Proteomics 7(7): 1009-11.
Patrakka, J., Xiao, Z., Nukui, M., Takemoto, M., He, L., Oddsson, A., Perisic, L., Kaukinen, A., Szigyarto, C. A., Uhlen, M., Jalanko, H., Betsholtz, C. and Tryggvason, K. (2007)
Expression and subcellular distribution of novel glomerulus-associated proteins dendrin, ehd3, sh2d4a, plekhh2, and 2310066E14Rik J Am Soc Nephrol 18(3): 689-97.
Schwenk, J. M., Lindberg, J., Sundberg, M., Uhlen, M. and Nilsson, P. (2007)
Determination of binding specificities in highly multiplexed bead-based assays for antibody proteomics Mol Cell Proteomics 6(1): 125-32.
Stromberg, S., Bjorklund, M. G., Asplund, C., Skollermo, A., Persson, A., Wester, K., Kampf, C., Nilsson, P., Andersson, A. C., Uhlen, M., Kononen, J., Ponten, F. and Asplund, A. (2007)
A high-throughput strategy for protein profiling in cell microarrays using automated image analysis Proteomics 7(13): 2142-50.
Taussig, M. J., Stoevesandt, O., Borrebaeck, C. A., Bradbury, A. R., Cahill, D., Cambillau, C., de Daruvar, A., Dubel, S., Eichler, J., Frank, R., Gibson, T. J., Gloriam, D., Gold, L., Herberg, F. W., Hermjakob, H., Hoheisel, J. D., Joos, T. O., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Maarel, S., McCafferty, J., Muyldermans, S., Nygren, P. A., Palcy, S., Pluckthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D. J., Skerra, A., Templin, M., Ueffing, M. and Uhlen, M. (2007)
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome Nat Methods 4(1): 13-7.
Uhlen, M. (2007)
Mapping the human proteome using antibodies Mol Cell Proteomics 6(8): 1455-6.
Andersson, A. C., Stromberg, S., Backvall, H., Kampf, C., Uhlen, M., Wester, K. and Ponten, F. (2006)
Analysis of protein expression in cell microarrays: a tool for antibody-based proteomics J Histochem Cytochem 54(12): 1413-23.
Andrade, J., Berglund, L., Uhlen, M. and Odeberg, J. (2006)
Using Grid technology for computationally intensive applied bioinformatics analyses In Silico Biol 6(6): 495-504.
Ek, S., Andreasson, U., Hober, S., Kampf, C., Ponten, F., Uhlen, M., Merz, H. and Borrebaeck, C. A. (2006)
From gene expression analysis to tissue microarrays: a rational approach to identify therapeutic and diagnostic targets in lymphoid malignancies Mol Cell Proteomics 5(6): 1072-81.
Eriksson, C., Agaton, C., Kange, R., Sundberg, M., Nilsson, P., Ek, B., Uhlen, M., Gustafsson, M. and Hober, S. (2006)
Microfluidic analysis of antibody specificity in a compact disk format J Proteome Res 5(7): 1568-74.
Haab, B. B., Paulovich, A. G., Anderson, N. L., Clark, A. M., Downing, G. J., Hermjakob, H., Labaer, J. and Uhlen, M. (2006)
A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report Mol Cell Proteomics 5(10): 1996-2007.
Larsson, K., Wester, K., Nilsson, P., Uhlen, M., Hober, S. and Wernerus, H. (2006).
Multiplexed PrEST immunization for high-throughput affinity proteomics J Immunol Methods 315(1-2): 110-20.
Persson, A., Hober, S. and Uhlen, M. (2006)
A human protein atlas based on antibody proteomics Curr Opin Mol Ther 8(3): 185-90.
Steen, J., Uhlen, M., Hober, S. and Ottosson, J. (2006)
High-throughput protein purification using an automated set-up for high-yield affinity chromatography Protein Expr Purif 46(2): 173-8.
Hedhammar, M., Stenvall, M., Lonneborg, R., Nord, O., Sjolin, O., Brismar, H., Uhlen, M., Ottosson, J. and Hober, S. (2005)
A novel flow cytometry-based method for analysis of expression levels in Escherichia coli, giving information about precipitated and soluble protein J Biotechnol 119(2): 133-46.
Janzi, M., Odling, J., Pan-Hammarstrom, Q., Sundberg, M., Lundeberg, J., Uhlen, M., Hammarstrom, L. and Nilsson, P. (2005)
Serum microarrays for large scale screening of protein levels Mol Cell Proteomics 4(12): 1942-7.
Lindskog, M., Rockberg, J., Uhlen, M. and Sterky, F. (2005)
Selection of protein epitopes for antibody production Biotechniques 38(5): 723-7.
Nilsson, P., Paavilainen, L., Larsson, K., Odling, J., Sundberg, M., Andersson, A. C., Kampf, C., Persson, A., Al-Khalili Szigyarto, C., Ottosson, J., Bjorling, E., Hober, S., Wernerus, H., Wester, K., Ponten, F. and Uhlen, M. (2005)
Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling Proteomics 5(17): 4327-37.
Stenvall, M., Steen, J., Uhlen, M., Hober, S. and Ottosson, J. (2005)
High-throughput solubility assay for purified recombinant protein immunogens Biochim Biophys Acta 1752(1): 6-10.
Uhlen, M., Bjorling, E., Agaton, C., Szigyarto, C. A., Amini, B., Andersen, E., Andersson, A. C., Angelidou, P., Asplund, A., Asplund, C., Berglund, L., Bergstrom, K., Brumer, H., Cerjan, D., Ekstrom, M., Elobeid, A., Eriksson, C., Fagerberg, L., Falk, R., Fall, J., Forsberg, M., Bjorklund, M. G., Gumbel, K., Halimi, A., Hallin, I., Hamsten, C., Hansson, M., Hedhammar, M., Hercules, G., Kampf, C., Larsson, K., Lindskog, M., Lodewyckx, W., Lund, J., Lundeberg, J., Magnusson, K., Malm, E., Nilsson, P., Odling, J., Oksvold, P., Olsson, I., Oster, E., Ottosson, J., Paavilainen, L., Persson, A., Rimini, R., Rockberg, J., Runeson, M., Sivertsson, A., Skollermo, A., Steen, J., Stenvall, M., Sterky, F., Stromberg, S., Sundberg, M., Tegel, H., Tourle, S., Wahlund, E., Walden, A., Wan, J., Wernerus, H., Westberg, J., Wester, K., Wrethagen, U., Xu, L. L., Hober, S. and Ponten, F. (2005)
A human protein atlas for normal and cancer tissues based on antibody proteomics Mol Cell Proteomics 4(12): 1920-32.
Uhlen, M. and Ponten, F. (2005)
Antibody-based proteomics for human tissue profiling Mol Cell Proteomics 4(4): 384-93. Agaton, C., Falk, R., Hoiden Guthenberg, I., Gostring, L., Uhlen, M. and Hober, S. (2004)
Selective enrichment of monospecific polyclonal antibodies for antibody-based proteomics efforts J Chromatogr A 1043(1): 33-40. Agaton, C., Uhlen, M. and Hober, S. (2004)
Genome-based proteomics Electrophoresis 25(9): 1280-8.
Kampf, C., Andersson, A.-C., Wester, K., Björling, E., Uhlen, M. and Ponten, F. (2004)
Antibody-based tissue profiling as a tool in clinical proteomics Clin Proteomics 1(3-4): 285-300.
Agaton, C., Galli, J., Hoiden Guthenberg, I., Janzon, L., Hansson, M., Asplund, A., Brundell, E., Lindberg, S., Ruthberg, I., Wester, K., Wurtz, D., Hoog, C., Lundeberg, J., Stahl, S., Ponten, F. and Uhlen, M. (2003)
Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues Mol Cell Proteomics 2(6): 405-14.
Large-scale proteomics analysis of human ovarian cancer for biomarkers J Proteome Res 6(4): 1440-50.
Lerner, M., Corcoran, M., Cepeda, D., Nielsen, M. L., Zubarev, R., Ponten, F., Uhlen, M., Hober, S., Grander, D. and Sangfelt, O. (2007)
The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD Mol Biol Cell 18(5): 1670-82.
Lundberg, E., Sundberg, M., Graslund, T., Uhlen, M. and Svahn, H. A. (2007)
A novel method for reproducible fluorescent labeling of small amounts of antibodies on solid phase J Immunol Methods 322(1-2): 40-9.
Mulder, J., Wernerus, H., Shi, T. J., Ponten, F., Hober, S., Uhlen, M. and Hokfelt, T. (2007)
Systematically generated antibodies against human gene products: high throughput screening on sections from the rat nervous system Neuroscience 146(4): 1689-703.
Orchard, S., Heck, A., Uhlen, M. and Ping, P. (2007)
Publication Committee meeting. HUPO 5th annual World Congress. Long Beach, CA, USA 30 October 2006 Proteomics 7(7): 1009-11.
Patrakka, J., Xiao, Z., Nukui, M., Takemoto, M., He, L., Oddsson, A., Perisic, L., Kaukinen, A., Szigyarto, C. A., Uhlen, M., Jalanko, H., Betsholtz, C. and Tryggvason, K. (2007)
Expression and subcellular distribution of novel glomerulus-associated proteins dendrin, ehd3, sh2d4a, plekhh2, and 2310066E14Rik J Am Soc Nephrol 18(3): 689-97.
Schwenk, J. M., Lindberg, J., Sundberg, M., Uhlen, M. and Nilsson, P. (2007)
Determination of binding specificities in highly multiplexed bead-based assays for antibody proteomics Mol Cell Proteomics 6(1): 125-32.
Stromberg, S., Bjorklund, M. G., Asplund, C., Skollermo, A., Persson, A., Wester, K., Kampf, C., Nilsson, P., Andersson, A. C., Uhlen, M., Kononen, J., Ponten, F. and Asplund, A. (2007)
A high-throughput strategy for protein profiling in cell microarrays using automated image analysis Proteomics 7(13): 2142-50.
Taussig, M. J., Stoevesandt, O., Borrebaeck, C. A., Bradbury, A. R., Cahill, D., Cambillau, C., de Daruvar, A., Dubel, S., Eichler, J., Frank, R., Gibson, T. J., Gloriam, D., Gold, L., Herberg, F. W., Hermjakob, H., Hoheisel, J. D., Joos, T. O., Kallioniemi, O., Koegl, M., Konthur, Z., Korn, B., Kremmer, E., Krobitsch, S., Landegren, U., van der Maarel, S., McCafferty, J., Muyldermans, S., Nygren, P. A., Palcy, S., Pluckthun, A., Polic, B., Przybylski, M., Saviranta, P., Sawyer, A., Sherman, D. J., Skerra, A., Templin, M., Ueffing, M. and Uhlen, M. (2007)
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome Nat Methods 4(1): 13-7.
Uhlen, M. (2007)
Mapping the human proteome using antibodies Mol Cell Proteomics 6(8): 1455-6.
Andersson, A. C., Stromberg, S., Backvall, H., Kampf, C., Uhlen, M., Wester, K. and Ponten, F. (2006)
Analysis of protein expression in cell microarrays: a tool for antibody-based proteomics J Histochem Cytochem 54(12): 1413-23.
Andrade, J., Berglund, L., Uhlen, M. and Odeberg, J. (2006)
Using Grid technology for computationally intensive applied bioinformatics analyses In Silico Biol 6(6): 495-504.
Ek, S., Andreasson, U., Hober, S., Kampf, C., Ponten, F., Uhlen, M., Merz, H. and Borrebaeck, C. A. (2006)
From gene expression analysis to tissue microarrays: a rational approach to identify therapeutic and diagnostic targets in lymphoid malignancies Mol Cell Proteomics 5(6): 1072-81.
Eriksson, C., Agaton, C., Kange, R., Sundberg, M., Nilsson, P., Ek, B., Uhlen, M., Gustafsson, M. and Hober, S. (2006)
Microfluidic analysis of antibody specificity in a compact disk format J Proteome Res 5(7): 1568-74.
Haab, B. B., Paulovich, A. G., Anderson, N. L., Clark, A. M., Downing, G. J., Hermjakob, H., Labaer, J. and Uhlen, M. (2006)
A reagent resource to identify proteins and peptides of interest for the cancer community: a workshop report Mol Cell Proteomics 5(10): 1996-2007.
Larsson, K., Wester, K., Nilsson, P., Uhlen, M., Hober, S. and Wernerus, H. (2006).
Multiplexed PrEST immunization for high-throughput affinity proteomics J Immunol Methods 315(1-2): 110-20.
Persson, A., Hober, S. and Uhlen, M. (2006)
A human protein atlas based on antibody proteomics Curr Opin Mol Ther 8(3): 185-90.
Steen, J., Uhlen, M., Hober, S. and Ottosson, J. (2006)
High-throughput protein purification using an automated set-up for high-yield affinity chromatography Protein Expr Purif 46(2): 173-8.
Hedhammar, M., Stenvall, M., Lonneborg, R., Nord, O., Sjolin, O., Brismar, H., Uhlen, M., Ottosson, J. and Hober, S. (2005)
A novel flow cytometry-based method for analysis of expression levels in Escherichia coli, giving information about precipitated and soluble protein J Biotechnol 119(2): 133-46.
Janzi, M., Odling, J., Pan-Hammarstrom, Q., Sundberg, M., Lundeberg, J., Uhlen, M., Hammarstrom, L. and Nilsson, P. (2005)
Serum microarrays for large scale screening of protein levels Mol Cell Proteomics 4(12): 1942-7.
Lindskog, M., Rockberg, J., Uhlen, M. and Sterky, F. (2005)
Selection of protein epitopes for antibody production Biotechniques 38(5): 723-7.
Nilsson, P., Paavilainen, L., Larsson, K., Odling, J., Sundberg, M., Andersson, A. C., Kampf, C., Persson, A., Al-Khalili Szigyarto, C., Ottosson, J., Bjorling, E., Hober, S., Wernerus, H., Wester, K., Ponten, F. and Uhlen, M. (2005)
Towards a human proteome atlas: high-throughput generation of mono-specific antibodies for tissue profiling Proteomics 5(17): 4327-37.
Stenvall, M., Steen, J., Uhlen, M., Hober, S. and Ottosson, J. (2005)
High-throughput solubility assay for purified recombinant protein immunogens Biochim Biophys Acta 1752(1): 6-10.
Uhlen, M., Bjorling, E., Agaton, C., Szigyarto, C. A., Amini, B., Andersen, E., Andersson, A. C., Angelidou, P., Asplund, A., Asplund, C., Berglund, L., Bergstrom, K., Brumer, H., Cerjan, D., Ekstrom, M., Elobeid, A., Eriksson, C., Fagerberg, L., Falk, R., Fall, J., Forsberg, M., Bjorklund, M. G., Gumbel, K., Halimi, A., Hallin, I., Hamsten, C., Hansson, M., Hedhammar, M., Hercules, G., Kampf, C., Larsson, K., Lindskog, M., Lodewyckx, W., Lund, J., Lundeberg, J., Magnusson, K., Malm, E., Nilsson, P., Odling, J., Oksvold, P., Olsson, I., Oster, E., Ottosson, J., Paavilainen, L., Persson, A., Rimini, R., Rockberg, J., Runeson, M., Sivertsson, A., Skollermo, A., Steen, J., Stenvall, M., Sterky, F., Stromberg, S., Sundberg, M., Tegel, H., Tourle, S., Wahlund, E., Walden, A., Wan, J., Wernerus, H., Westberg, J., Wester, K., Wrethagen, U., Xu, L. L., Hober, S. and Ponten, F. (2005)
A human protein atlas for normal and cancer tissues based on antibody proteomics Mol Cell Proteomics 4(12): 1920-32.
Uhlen, M. and Ponten, F. (2005)
Antibody-based proteomics for human tissue profiling Mol Cell Proteomics 4(4): 384-93. Agaton, C., Falk, R., Hoiden Guthenberg, I., Gostring, L., Uhlen, M. and Hober, S. (2004)
Selective enrichment of monospecific polyclonal antibodies for antibody-based proteomics efforts J Chromatogr A 1043(1): 33-40. Agaton, C., Uhlen, M. and Hober, S. (2004)
Genome-based proteomics Electrophoresis 25(9): 1280-8.
Kampf, C., Andersson, A.-C., Wester, K., Björling, E., Uhlen, M. and Ponten, F. (2004)
Antibody-based tissue profiling as a tool in clinical proteomics Clin Proteomics 1(3-4): 285-300.
Agaton, C., Galli, J., Hoiden Guthenberg, I., Janzon, L., Hansson, M., Asplund, A., Brundell, E., Lindberg, S., Ruthberg, I., Wester, K., Wurtz, D., Hoog, C., Lundeberg, J., Stahl, S., Ponten, F. and Uhlen, M. (2003)
Affinity proteomics for systematic protein profiling of chromosome 21 gene products in human tissues Mol Cell Proteomics 2(6): 405-14.